Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0762352.2b with 2 members (receptor 83)

Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii /

... /

Tetrapoda / Amniota / Sauria / Archelosauria / Cryptodira /

Testudinoidea

Completeness score: 1.00

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This HOG has 52 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0762352.2b	76	50	receptor 83
2	HOG:E0762352.1a	18	46	receptor 83
3	HOG:E0762352.2e	15	176	receptor 83
4	HOG:E0762352.1a.1c	9	17	receptor 83
5	HOG:E0762352.2b.4a	6	9	receptor 83
6	HOG:E0762352.1a.1c.6b	6	3	receptor 83
7	HOG:E0762352.2e.7a	4	8	receptor 83
8	HOG:E0762352.1a.1c.5b	4	2	receptor 83
9	HOG:E0762352.1a.1c.5a	4	2	receptor 83
10	HOG:E0762352.1a.1b.3c	4	2	receptor 83
11	HOG:E0762352.1a.1b.3b	4	2	receptor 83
12	HOG:E0670808	4	5	probable G-protein coupled receptor 83
13	HOG:E0762352.2e.6a	3	3	receptor 83
14	HOG:E0762352.2c	3	4	receptor 83
15	HOG:E0762352.2a	3	2	receptor 83
16	HOG:E0660801	3	3	G-protein coupled
17	HOG:E0789027.1bo	2	1	G-protein coupled receptors family
18	HOG:E0789027.1ar	2	1	G-protein coupled receptors family
19	HOG:E0789027.1ak	2	1	G-protein coupled receptors family
20	HOG:E0762352.2b.4b	2	1	receptor 83
21	HOG:E0762352.2b.4a.9b	2	1	receptor 83
22	HOG:E0762352.2b.4a.9a	2	1	receptor 83
23	HOG:E0762352.2b.4a.8b	2	1	receptor 83
24	HOG:E0762352.2b.4a.8a	2	1	receptor 83
25	HOG:E0762352.2b.4a.10a	2	1	receptor 83

Showing 1 to 25 of 52 rows rows per page